gov.nih.nlm.mms.browser
Class WordSearchFinder

java.lang.Object
  gov.nih.nlm.mms.AbstractGUIConfigurable
      gov.nih.nlm.mms.browser.AbstractFinder
          gov.nih.nlm.mms.browser.WordSearchFinder

All Implemented Interfaces:

Finder, Configurable, GUIConfigurable, Comparable

public class WordSearchFinder
extends AbstractFinder

Finds Concepts via word searches. All methods in this class should be called from a separate thread.

Author:

Deborah Shapiro

Nested Class Summary

class	WordSearchFinder.BackwardAction Action provided to display the previous page of word search results.
class	WordSearchFinder.ForwardAction Action provided to display the next page of word search results.
static class	WordSearchFinder.Options Options is the model of the WordSearchFinder.OptionsGUI dialog.
class	WordSearchFinder.OptionsGUI Options GUI for WordSearchFinder.
class	WordSearchFinder.PopupListener Listens to display the JPopupMenu.
static class	WordSearchFinder.RadioButtonChoice Enumerates radio button choices in WordSearchFinder.OptionsGUI.

Field Summary

protected static String	DELIM
static String	normalized_mode Normalized Search Mode
static String	regular_mode Regular Search Mode

Fields inherited from class gov.nih.nlm.mms.browser.AbstractFinder

clm, conceptDataSelector, fBrowsableInputStream, font_family, font_point_size, has_data_changed, searchOptions

Fields inherited from class gov.nih.nlm.mms.AbstractGUIConfigurable

data_changed, default_configuration, listeners, user_configuration

Constructor Summary

WordSearchFinder()
Instantiates a WordSearchFinder.

Method Summary

void	addDataChangeListener(DataChangeListener dcl) Adds a DataChangeListener that responds to configuration changes.
protected double	estimateCost(String[] searchWords, WordSearchFinder.RadioButtonChoice radioButtonChoice, Map wordFrequencyMap) Estimates the cost of searching for the specified words, given a Map of the word frequency counts within strings.
protected Concept[]	findConceptsByWords(String[] words, Map wordFrequencyMap, WordSearchFinder.Options options) Find Concepts that match search words, with results filtered by WordSearchFinder.Options.
String	getLvgConfigFile() Returns the LVG configuration file.
String	getName() Returns the name.
JPanel	getPanel() Returns a JPanel containing configuration options.
Properties	getProperties() Method returns all properties specific to the Finder.
String	getSearchMode() Returns the search mode.
boolean	hasAdvancedOptions() Indicates whether or not an options menu item should be supplied for advanced configuration options.
void	highlightText() Highlights the text displayed in the word text field.
void	refresh() Redraws the text portions of the Finder.
void	removeDataChangeListener(DataChangeListener dcl) Removes the specified DataChangeListener.
void	resetToDefaults() Resets the configuration back to default values.
void	setLvgConfigFile(String lvg_config_file) Sets the LVG configuration file.
void	setProperties(Properties p) Sets the finder properties.
void	setSearchMode(String search_mode) Sets the search mode.
void	showOptions() Presents an advanced options GUI to the user.
void	subsetDirectoryOpened(File source_dir) Handles opening of a source directory.

Methods inherited from class gov.nih.nlm.mms.browser.AbstractFinder

getBrowsableInputStream, getConceptDataSelector, getHelpPanel, setBrowsableInputStream, setConceptDataSelector, setConceptListManager, setFontFamily, setFontPointSize, setPanelSelections, setSearchOptions

Methods inherited from class gov.nih.nlm.mms.AbstractGUIConfigurable

addValidationError, addValidationWarning, clearValidationErrors, clearValidationWarnings, compareTo, fireDataChanged, getColor, getConfigurationDetails, getGUIConfigurableForValidationFailure, getTabDescription, getValidationErrors, getValidationWarnings, hasDataChanged, resetDataChanged, setConfiguration, setConfiguration, setDataChanged, validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface gov.nih.nlm.mms.GUIConfigurable

getColor, getGUIConfigurableForValidationFailure, getTabDescription, getValidationErrors, getValidationWarnings, hasDataChanged, resetDataChanged, setDataChanged, validate

Methods inherited from interface gov.nih.nlm.mms.Configurable

getConfigurationDetails, setConfiguration, setConfiguration

Field Detail

regular_mode

public static String regular_mode

Regular Search Mode

normalized_mode

public static String normalized_mode

Normalized Search Mode

DELIM

protected static final String DELIM

See Also:

Constant Field Values

Constructor Detail

WordSearchFinder

public WordSearchFinder()

Instantiates a WordSearchFinder.

Method Detail

getPanel

public JPanel getPanel()

Returns a JPanel containing configuration options.

Specified by:

getPanel in interface GUIConfigurable

Overrides:

getPanel in class AbstractGUIConfigurable

Returns:

a JPanel containing configuration options

getProperties

public Properties getProperties()

Method returns all properties specific to the Finder.

Specified by:

getProperties in interface Configurable

Overrides:

getProperties in class AbstractGUIConfigurable

Returns:

Properties only those directly related to the finder.

setProperties

public void setProperties(Properties p)

Sets the finder properties.

Specified by:

setProperties in interface Configurable

Overrides:

setProperties in class AbstractGUIConfigurable

Parameters:

p - Properties

subsetDirectoryOpened

public void subsetDirectoryOpened(File source_dir)

Handles opening of a source directory.

Specified by:

subsetDirectoryOpened in interface Finder

Overrides:

subsetDirectoryOpened in class AbstractFinder

Parameters:

source_dir - the source directory

getSearchMode

public String getSearchMode()

Returns the search mode.

Returns:

search mode

setSearchMode

public void setSearchMode(String search_mode)

Sets the search mode.

Parameters:

search_mode -

getLvgConfigFile

public String getLvgConfigFile()

Returns the LVG configuration file.

Returns:

lvg configuration file

setLvgConfigFile

public void setLvgConfigFile(String lvg_config_file)

Sets the LVG configuration file.

Parameters:

lvg_config_file -

resetToDefaults

public void resetToDefaults()

Resets the configuration back to default values. When used with a GUI this method should change the data model behind the GUI and allow setPanelSelections to actually update the GUI.

Specified by:

resetToDefaults in interface Configurable

Overrides:

resetToDefaults in class AbstractGUIConfigurable

findConceptsByWords

protected Concept[] findConceptsByWords(String[] words,
                                        Map wordFrequencyMap,
                                        WordSearchFinder.Options options)
                                 throws InterruptedException,
                                        IOException

Find Concepts that match search words, with results filtered by WordSearchFinder.Options.

Parameters:

words - search words

wordFrequencyMap - Map of search word frequencies.

options - WordSearchFinder.Options

Returns:

array of Concept matches.

Throws:

InterruptedException

IOException

estimateCost

protected double estimateCost(String[] searchWords,
                              WordSearchFinder.RadioButtonChoice radioButtonChoice,
                              Map wordFrequencyMap)

Estimates the cost of searching for the specified words, given a Map of the word frequency counts within strings.

Parameters:

searchWords - array of words to be searched

radioButtonChoice - (@link RadioButtonChoice} for limiting results

wordFrequencyMap - Map from words to frequencies of those words within strings

Returns:

estimated cost of the search.

highlightText

public void highlightText()

Highlights the text displayed in the word text field.

addDataChangeListener

public void addDataChangeListener(DataChangeListener dcl)

Adds a DataChangeListener that responds to configuration changes. Allows main GUI to record all changes to this gui in the undo/redo mechanism.

Specified by:

addDataChangeListener in interface GUIConfigurable

Overrides:

addDataChangeListener in class AbstractGUIConfigurable

Parameters:

dcl - the DataChangeListener to add

removeDataChangeListener

public void removeDataChangeListener(DataChangeListener dcl)

Removes the specified DataChangeListener.

Specified by:

removeDataChangeListener in interface GUIConfigurable

Overrides:

removeDataChangeListener in class AbstractGUIConfigurable

Parameters:

dcl - the DataChangeListener to remove

getName

public String getName()

Returns the name.

Specified by:

getName in interface GUIConfigurable

Overrides:

getName in class AbstractGUIConfigurable

Returns:

the name

showOptions

public void showOptions()

Presents an advanced options GUI to the user.

Specified by:

showOptions in interface GUIConfigurable

Overrides:

showOptions in class AbstractGUIConfigurable

hasAdvancedOptions

public boolean hasAdvancedOptions()

Indicates whether or not an options menu item should be supplied for advanced configuration options.

Specified by:

hasAdvancedOptions in interface GUIConfigurable

Overrides:

hasAdvancedOptions in class AbstractGUIConfigurable

Returns:

true if so; false otherwise

refresh

public void refresh()

Redraws the text portions of the Finder.

Specified by:

refresh in interface Finder

Overrides:

refresh in class AbstractFinder