Package gov.nih.nlm.mms

Core MetamorphoSys classes.

See:
Description

Interface Summary

ConceptInputStream	This interface defines an API for reading Concepts from some input source.
ConceptOutputStream	This interface defines an API for writing Concepts to the output Metathesaurus, an output destination.
Configurable	Generically represents an object that can be configured by the MetamorphoSys application.
CuiList	This class is used during the first phase of MetamorphoSys subsetting, in which a list of cuis to be kept is built up.
GUIConfigurable	Generically represents an object that can be configured by the MetamorphoSysGUI.
MetamorphoSysInputStream	Generically represents an input source for Metathesaurus data.
MetamorphoSysOutputStream	Generically represents an output source for Metathesaurus data.
RedoHandler	Generically represents a handler for re-performing an undone action.
SourcesToRemoveListener	Generically represents a listener for events pertaining to changes in the list of sources to remove.
SubsetListener	Generically represents a listener interested in different phases of the subsetting process.
UndoHandler	Generically represents a handler for undoing a certain action.

Class Summary

AboutAction	This class is used for the Help->About menu of the MetamorphoSysGUI.
AbstractGUIConfigurable	Generically represents an object that can be configured by the MetamorphoSysGUI.
AdvancedOptionsAction	Action used for an application level options menu item.
AdvancedOptionsGUI	This dialog is used to configure the application level parameters.
ApplicationConfiguration	Represents all application-level configuration data.
BatchMetamorphoSys	Class designed to enable running MetamorphoSys without the gui for configuration.
BeginSubsetAction	Used to initiate the subsetting process.
ChecksumValidator	Validates byte counts and MD5s for the NLM files.
ConceptInputStreamAction	Used to change the input stream.
ConceptOutputStreamAction	Used to change the output stream.
ConceptQueue	First In First Out queue for Concept objects.
ConceptRanker
ConfigurationGUI	This dialog is used to choose the configuration options during the installation process.
ConfigureSubsetProgressMonitor	GUI for displaying subsetting progress.
CopyToHardDriveAction	This class is used for the File->Copy to Hard Drive menu of the WelcomeGUI.
CuiSuiAuiList	This class is used during the first phase of MetamorphoSys subsetting, in which a list of cuis to be kept is built up.
DefaultSubset	Represents a default initial configuration selected by a user.
DefaultSubsetSelectionGUI	Dialog for user to select the DefaultSubset.
Dependency	Represents a dependency between two sources.
EnableFilterAction	Handles enabling and disabling of filters.
EnableFilterRedoHandler	Handles the redo operation for an enable or disable filter action.
EnableFilterUndoHandler	Handles the undo operation for an enable or disable filter action.
ExitAction	Exits the application.
FilterEnableDialog	Prompts the user to select which filters should be enabled or disabled.
GUIConfigurableRedoHandler	Handles redoing regular actions in the GUI.
GUIConfigurableUndoHandler	Handles undoing regular actions in the GUI.
ImportFilterAction	Imports filters from the paths in the /ext directory Used for the File->Import Filter menu of MetamorphoSysGUI.
IndexEntryQueue	First In First Out queue for IndexEntry objects.
InputStreamRedoHandler	Handles redo operation for a change in input handler.
InputStreamUndoHandler	Handles undo operation for a change in input handler.
InstallationGUI	Used to choose the basic installation options.
InstallationProgressMonitor	GUI for displaying subsetting progress.
InstallConfiguration	Represents the user's configuration choices up to the point where a configuration file is loaded and MetamorphoSysGUI is instantiated.
LicenseAgreementGUI	Used to present the license agreement (or equivalent URL) to the user and have the user "accept" it before going on.
MetamorphoSys	This class represents the MetamorphoSys application itself.
MetamorphoSysGUI	GUI application for configuring the MetamorphoSys subsetting operation.
MetamorphoSysWebStart	Java Web Start Launcher.
MMSProgressMonitor	Progress monitor for installation and subsetting.
MMSToolkit	Utility class containing methods for MetamorphoSys applications.
NewConfigAction	Opens a new configuration file.
NLMFileMetamorphoSysInputStream	Represents a MetamorphoSysInputStream which are file(s) in the "NLM data file" format.
OpenConfigAction	Opens a configuration file.
OriginalMRMetamorphoSysInputStream	Represents an MetamorphoSysInputStream containing Original Release Format MR files in a directory.
OriginalMRMetamorphoSysOutputStream	Represents a MetamorphoSysOutputStream that writes a directory containing Original Release Format Metathesaurus files.
OutputStreamRedoHandler	Handles redo operation for a change in output handler.
OutputStreamUndoHandler	Handles undo operation for a change in output handler.
RedoAction	Re-performs an undone action.
RichMRMetamorphoSysInputStream	Represents a MetamorphoSysInputStream that reads content from a directory containing Rich Release Format Metathesaurus files.
RichMRMetamorphoSysOutputStream	This MetamorphoSysOutputStream obtains data from the MetamorphoSys subset routine and generates a subset of Rich Release MR files.
SaveConfigAction	Saves a config file.
SaveConfigAction.PropertiesFileFilter	FileFilter class for JFileChooser to limit files to .properties file extension.
SourcesToRemoveEvent	Represents a change in the list of sources to remove.
SubsetGUI	This dialog is used to choose the configuration options.
UndoAction	Unperforms an action.
UserConfiguration	Represents a set of user configurations, including all of the relevant filter configuration data.
ValidateDistributionAction	Used for the File->Validate menu of the WelcomeGUI.
Version	The Version class aggregates change information for the gov.nih.nlm.mms package.
WelcomeGUI	Application entry point for GUI users.

Exception Summary

LocalException

Represents an exception thrown by a "known" problem.

Package gov.nih.nlm.mms Description

Core MetamorphoSys classes. This package contains all of the core classes used to implement the MetamorphoSys application and its basic features and architecture. Sub-packages implement more specific things like the actual filtering functions.