gov.nih.nlm.mms.cxt
Class MRCXTBuilderOutputStream

java.lang.Object
  gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
      gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream

All Implemented Interfaces:

ConceptInputStream

public class MRCXTBuilderOutputStream

extends RichMRFilesConceptInputStream

Builds MRCXT.RRF from MRHIER.RRF and MRCONSO.RRF with the help of a few indexes.

Author:

Deborah Shapiro

Field Summary

Fields inherited from class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream

add_suffix, atom_hm, file_names, from_rsab, from_vsab, install_paths, mrcoc_source, mrconso_counter, mrconso_lines, mrconso_source, mrcxt_source, mrdef_source, mrdoc_source, mrhier_source, mrhist_source, mrmap_source, mrrel_source, mrsat_source, mrsty_source, rel_hm, this_concept, to_rsab, to_vsab, tokens

Constructor Summary

MRCXTBuilderOutputStream()
Instantiates an empty MRCXTBuilderOutputStream.

Method Summary

boolean	isCancelled() Indicates whether or not the license agreement was cancelled or not accepted.
protected void	openMRFiles() Opens the Rich Release Format MR files.
void	sortMRCXT(MRCXTBuilderGUI gui) Sorts the MRCXT.RRF file.
int	writeMRCXT(MRCXTBuilderGUI gui) Writes MRCXT.RRF

Methods inherited from class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream

close, getAtoms, getAttributes, getComponentHistories, getConceptProgress, getContexts, getCoocurrences, getDefinitions, getLineCounts, getMappings, getRelationships, getSemanticTypes, newInstanceFromMRCONSO, newInstanceFromMRHIER, open, openSourceFile, readConcept, setAdditionalSuffix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MRCXTBuilderOutputStream

public MRCXTBuilderOutputStream()

Instantiates an empty MRCXTBuilderOutputStream.

Method Detail

writeMRCXT

public int writeMRCXT(MRCXTBuilderGUI gui)
               throws Exception

Writes MRCXT.RRF

Parameters:

gui - the MRCXTBuilderGUI

Returns:

int count of mrhier lines

Throws:

Exception - if anything goes wrong

sortMRCXT

public void sortMRCXT(MRCXTBuilderGUI gui)
               throws Exception

Sorts the MRCXT.RRF file.

Parameters:

gui - MRCXTBuilderGUI

Throws:

Exception

isCancelled

public boolean isCancelled()

Indicates whether or not the license agreement was cancelled or not accepted.

Returns:

true if the GUI was cancelled, false otherwise

openMRFiles

protected void openMRFiles()
                    throws IOException

Opens the Rich Release Format MR files.

Overrides:

openMRFiles in class RichMRFilesConceptInputStream

Throws:

IOException - if any files cannot be opened